It took me quite a while to get this all right. Put the following into your nginx.conf. Adjust paths as needed.
server { root /Users/USERNAME/development/9ewiki; listen 8080; server_name 9ewiki; server_name_in_redirect off; location ~ \.php$ { fastcgi_pass 127.0.0.1:8888; fastcgi_index doku.php; include fastcgi.conf; } location / { root /Users/USERNAME/development/9ewiki; index index.html doku.php index.php; rewrite ^/_media/(.*) /lib/exe/fetch.php?media=$1 last; rewrite ^/_detail/(.*) /lib/exe/detail.php?media=$1 last; rewrite ^/_export/([^/]+)/(.*) /doku.php?do=export_$1&id=$2 last; rewrite ^/$ /doku.php last; if (-f $request_filename) { break; } if (-d $request_filename) { break; } rewrite /(.*) /doku.php?id=$1 last; rewrite ^index.php$ /doku.php; } }